Copyright: © 2026 by the authors. Licensee: Pirogov University.
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ORIGINAL RESEARCH

The structure and biological potential of substituted uracil-propanesultone derivatives: from tautomeric preferences to drug design

About authors

1 Pirogov Russian National Research Medical University, Moscow, Russia

2 Nesmeyanov Institute of Organoelement Compounds of the Russian Academy of Sciences, Moscow, Russia

Correspondence should be addressed: Vadim V. Negrebetsky
Ostrovityanova Str., 1, Moscow, 117513, Russia; ur.umsr@1ykstebergen

About paper

Author contribution: Gusev RA — performing QSAR analysis, preparation of the manuscript; Kramarova EP — preparation of the manuscript; Volchenkov TI — performing QSAR analysis; Korlyukov AA — quantum-chemical calculations, preparation of the manuscript; Lagunin AA — performing QSAR analysis, preparation of the manuscript; Baukov YI — academic advising; Shmigol TA — biological part, preparation of the manuscript; Negrebetsky VV — formulation of the study goal, preparation of the manuscript; all authors contributed equally to the preparation of the manuscript; they confirm that their contribution complies with the international criteria of ICMJE.

Received: 2026-05-29 Accepted: 2026-06-10 Published online: 2026-06-16
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  1. Mohammad R. Mohammadizadeh, Javad Azizian, Fatemeh Teimouri, Ali A. Mohammadi, Ali R. Karimi, and Esmail Tamari. Reactions of 6-aminouracils — A novel and highly efficient procedure for preparation of some new spiro pyridodipyrimidines under classical or microwave-assisted solvent-free conditions. Can. J. Chem. 2008; 86 (9): 925–929.
  2. Mohamed MS, Awad SM, Sayed AI. Synthesis of Certain Pyrimidine Derivatives as Antimicrobial Agents and Anti-Inflammatory Agents. Molecules. 2010; 15 (3): 1882–1890.
  3. Yagi K, Akimoto K, Mimori N, Miyake T, Kudo M, Arai K, Ishii S. Synthesis and insecticidal/acaricidal activity of novel 3-(2,4,6-trisubstituted phenyl)uracil derivatives Pest. Manage. Sci. 2000; 56 (1): 65–73.
  4. Isobe Y, Tobe M, Inoue Y, Isobe M, Tsuchiya M, Hayashi H. Structure and activity relationships of novel uracil derivatives as topical anti-inflammatory agents. Bioorg. Med. Chem. 2003; 11 (23): 4933–4940.
  5. Presant CA, Wolf W, Waluch V, Wiseman C, Kennedy P, Blayney D, Brechner RR. Association of Intratumoral Pharmacokinetics of Fluorouracil with Clinical Response. Lancet. 1994; 343: 1184–1187.
  6. Nahla Said M. Ibrahim, Hanan H. Kadry, Ashraf F. Zaher, Khaled O. Mohamed. Review: synthesis and anticancer activity of pyrimido[4,5-b]quinolines in the last twenty years. Chemical Papers. 2024; 78: 2729–2755.
  7. El-Kalyoubi SA, Fayed EA, Abdel-Razek AS. One pot synthesis, antimicrobial and antioxidant activities of fused uracils: pyrimidodiazepines, lumazines, triazolouracil and xanthines. Chemistry Central Journal. 2017, 11. DOI: 10.1186/s13065-017-0294-0.
  8. Itoh T, Ishikawa I, Tomii Y, Mizuno Y, Ogura H, Kawahara. Syntheses of Pyrido[2,3-d] pyrimidine Nucleosides via 6-Allylaminouridines from 6,5’-Anhydroridine Derivative and Allyamines. Heterocycles. 1990; 30 (1): 231.
  9. Güney M, Çavdar H, Şentürk M, Ekinci D. Synthesis and carbonic anhydrase inhibitory properties of novel uracil derivatives. Bioorg. Med. Chem. Lett. 2015; 25 (16): 3261–3263.
  10. Wieczorkiewicz PA; Krygowski TM; Szatylowicz H. Intramolecular Interactions in Derivatives of Uracil Tautomers. Molecules. 2022; 27: 7240. DOI: 10.3390/molecules27217240.
  11. Tsuchiya Y; Tamura T; Fujii M; Ito M. Keto-Enol Tautomer of Uracil and Thymine. J. Phys. Chem. 1988; 92: 1760–1765.
  12. Beak P; White JM. Relative Enthalpies of 1,3-Dimethyl-2,4-Pyrimidinedione, 2,4-Dimethoxypyrimidine, and 4-Methoxy-1-Methyl-1-2-Pyrimidinone: Estimation of the Relative Stabilities of Two Protomers of Uracil. J. Am. Chem. Soc. 1982; 104: 7073–7077.
  13. Gusev RA, Kramarova EP, Tarasenko DV, Korlyukov AA, Romanenko AR, Dorovatovskii PV, Shmigol TA, Baukov YuI, Negrebetsky VV. Novyye proizvodnyye propansul’fokisloty na osnove pirimidinovykh osnovaniy: sintez, reaktsionnaya sposobnost’, stroyeniye. Russian Chemical Bulletin. 2026; 75: 1570. Russian.
  14. Kramarova EP, Lyahmun DN, Tarasenko DV, Korlyukov AA, Dorovatovskii PV, Shmigol TA, Bylikin SYu, Baukov YuI, Negrebetsky VV. An expedient synthesis of a picolinamide-based betain bearing a 3-sulfonatopropyl substituent. Mendeleev Commun. 2024; 34: 126–128. DOI: 10.1016/j.mencom.2024.01.038.
  15. Kramarova EP, Lyakhmun DN, Tarasenko DV, Borisevich SS, Khamitov EM, Yusupova AR, Korlyukov AA, Romanenko AR, Shmigol TA, Bylikin SYu, Baukov YuI, Negrebetsky VV. Reaction of Picolinamides with Ketones Producing a New Type of Heterocyclic Salts with an Imidazolidin-4-One Ring. Molecules. 2023; 29: 206. DOI: 10.3390/molecules29010206.
  16. Borozdenko DA, Gonchar DI, Bogorodova VI, Tarasenko DV, Kramarova EP, Khovanova SS, Golubev YV, Kiseleva NM, Shmigol TA, Ezdoglian AA, Sobyanin KA, Negrebetsky VV, Baukov Yu I. The Antidepressant Activity of a Taurine-Containing Derivative of 4-Phenylpyrrolidone-2 in a Model of Chronic Unpredictable Mild Stress. Int. J. Mol. Sci. 2023; 24: 16564. DOI: 10.3390/ ijms242316564.
  17. Kramarova EP, Borisevich SS, Khamitov EM, Korlyukov AA, Dorovatovskii PV, Shagina AD, Mineev KS, Tarasenko DV, Novikov RA, Lagunin AA, Boldyrev IA, Ezdoglian AA, Karpechenko NYu, Shmigol TA, Baukov YuI, Negrebetsky VV. Pyridine Carboxamides Based on Sulfobetaines: Design, Reactivity, and Biological Activity. Molecules. 2022; 27 (21): 7542. DOI: 10.3390/ molecules27217542.
  18. Borozdenko DA, Shmigol TA, Ezdoglian AA, Gonchar DI, Karpechenko NY, Lyakhmun DN, Shagina AD, Cherkashova EA, Namestnikova DD, Gubskiy IL, Chernysheva AA, Kiseleva NM, Negrebetsky VV, Baukov Yu I. The Effect of a New N-hetero Cycle Derivative on Behavior and Inflammation against the Background of Ischemic Stroke Molecules. 2022; 27: 5488. DOI: 10.3390/ molecules27175488.
  19. Borozdenko DA, Ezdoglian AA, Shmigol TA, Gonchar DI, Lyakhmun DN, Tarasenko DV, Golubev YV, Cherkashova EA, Namestnikova DD, Gubskiy IL, Lagunin AA, Gubsky LV, Chekhonin VP, Borisevich SS, Gureev MA, Shagina AD, Kiseleva NM, Negrebetsky VV, Baukov Yu I. A Novel Phenylpyrrolidine Derivative: Synthesis and Effect on Cognitive Functions in Rats with Experimental Ishemic Stroke. Molecules. 2021; 26 (20): 6124. DOI: 10.3390/molecules26206124.
  20. Gonchar DI, Kramarova EP, Shmigol TA, Tarasenko DV, Коrlyukov AA, Lagunin AA, Каrpechenko NYu, Кiseleva NM, Baukov YuI, Negrebetsky VV. Zameshchennyye n-fenoksiatsetiltauraty: sintez, osobennosti stroyeniya, biologicheskaya aktivnost’ Russ. Chem. Bull. 2025; 74: 2907 Russian.
  21. O’Boyle NM, Banck M, James CA, Morley C, Vandermeersch T, Hutchison GR. Open Babel: An open chemical toolbox. J. Cheminform. 2011; 3: 33.DOI: 10.1186/1758-2946-3-33.
  22. Pracht P, Grimme S, Bannwarth C, Bohle F, Ehlert S, Feldmann G, Gorges J, Müller M, Neudecker T, Plett C, Spicher S, Steinbach P, Wesołowski PA, Zeller F. CREST — A program for the exploration of low-energy molecular chemical space. The Journal of Chemical Physics. 2024; 160: 114110. DOI: https:// doi.org/10.1063/5.0197592.
  23. Neese F. The ORCA program system. WIREs Comput. Mol. Sci. 2012, 2: 73–78. DOI: 10.1002/wcms.81.
  24. Müller M, Hansen A, Grimme S. ωB97X-3c: A composite range-separated hybrid DFT method with a molecule-optimized polarized valence double-ζ basis set. The Journal of Chemical Physics. 2023; 158: 014103. DOI: 10.1063/5.0133026.
  25. Caldeweyher E, Ehlert S, Hansen A, Neugebauer H, Spicher S, Bannwarth C, Grimme S. A generally applicable atomic-charge dependent London dispersion correction. The Journal of Chemical Physics. 2019; 150: 154122. DOI: 10.1063/1.5090222.
  26. Poroikov VV, Filimonov DA, Gloriozova TA, Lagunin AA, Druzhilovskiy DS, Stolbov LA, Dmitriev AV, Tarasova OA, Ivanov SM, Pogodin PV. Komp’yuternyy prognoz spektrov biologicheskoy aktivnosti organicheskikh soyedineniy: vozmozhnosti i ogranicheniya. Russian Chemical Bulletin. 2019; 68 (12): 2143– 2154. DOI: 10.1007/s11172-019-2683-0. Russian.
  27. Lagunin AA, Goel RK, Gawande DY, Pahwa P, Gloriozova TA, Dmitriev AV, Ivanov SM, Rudik AV, Konova VI, Pogodin PV, Druzhilovsky DS, Poroikov VV. Chemo- and bioinformatics resources for in silico drug discovery from medicinal plants beyond their traditional use: a critical review. Nat. Prod. Rep. 2014; 31 (11): 1585–1611. DOI: 10.1039/c4np00068d.